PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G228600.1
Common NamePHAVU_001G228600g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family M-type_MADS
Protein Properties Length: 238aa    MW: 27145.4 Da    PI: 10.4597
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G228600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.57.2e-181050242
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                        +i n+s r+ tf kR++g++KK +ELS+LC+++++ i++s+
  Phvul.001G228600.1 10 FIANDSARKATFKKRKKGLMKKVSELSTLCGIDACAIVYSP 50
                        899*************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.82149IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-25160IPR002100Transcription factor, MADS-box
CDDcd002662.32E-24285No hitNo description
SuperFamilySSF554553.92E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-8323IPR002100Transcription factor, MADS-box
PfamPF003197.8E-191051IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MTRKKVKLAF IANDSARKAT FKKRKKGLMK KVSELSTLCG IDACAIVYSP YDPQPEVWPS  60
PMGVQRVLAK FRRMPELEQS KKMVNQESFL RQRILKAKDQ LKKQRKDNRE KEMTQLMFQY  120
LSAGKIMHNI SMVDLNDLAW LIDQNLKDIN RRIEVLTKNT QSQTQVAAPA VTDVVAKIED  180
KGQGSHNGQG FDINMDLMHK QNWFMNLMNS GGGGGNETMP FGDVNHQNGF WPNPFFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFIANDSARKATFKKRK
22125KKRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163366.11e-179hypothetical protein PHAVU_001G228600g
SwissprotQ9FJK31e-67AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLV7D1F91e-179V7D1F9_PHAVU; Uncharacterized protein
STRINGGLYMA18G04760.11e-149(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-69AGAMOUS-like 80